PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Manes.01G185600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
Family ZF-HD
Protein Properties Length: 316aa    MW: 34908.7 Da    PI: 7.8862
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Manes.01G185600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer101.65.3e-3252109258
          ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          ++v YkeClkNhAa+lGg a+DGCgEfmp++++   ++++lkCaACgCHRnFHRr + 
  Manes.01G185600.1.p  52 AAVSYKECLKNHAAALGGLALDGCGEFMPTPTDAtPDPTSLKCAACGCHRNFHRRYPY 109
                          5799**************************9988789******************865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047707.7E-2754107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-954115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.6E-2956106IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.24156107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-26176248IPR009057Homeodomain-like
SuperFamilySSF466892.09E-15177248IPR009057Homeodomain-like
TIGRFAMsTIGR015651.2E-25186244IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDLTPSKSHE SDTDTETPLQ THLSRALSLS NGSFNPSHHY HTTNTRPSPL QAAVSYKECL  60
KNHAAALGGL ALDGCGEFMP TPTDATPDPT SLKCAACGCH RNFHRRYPYT HLPPPPTAAL  120
HWTSSPSPGH TSSGPSPSPN SPVSPTPQQS VYPSAPHMLL ALSTGHSGLF DENHHQSLTV  180
MNPHGRKRAR TKFTEEQKQK MLVFAEKLGW KMLRGNEEKM VDEFCNEVGV KRNVFKVWMH  240
NNKQRKEKGN NHRTCDINKS IVNDNEDRVG FGTFDCNSND INNTKYDNFT TRYQIENKVH  300
DVHGGGSPDE SSPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-181872431873ZF-HD homeobox family protein
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012067639.11e-134PREDICTED: zinc-finger homeodomain protein 11-like
SwissprotQ9SEZ11e-59ZHD11_ARATH; Zinc-finger homeodomain protein 11
TrEMBLA0A067KYG41e-134A0A067KYG4_JATCU; Uncharacterized protein
STRINGPOPTR_0010s17650.11e-101(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.11e-38zinc finger homeodomain 1